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SciKit-Digital-Health Documentation

0.17.13
  • Installation
  • Data
  • Examples
  • SKDH API
  • Contributing
  • SKDH Research
  • GitHub
  • Installation
  • Data
  • Examples
  • SKDH API
  • Contributing
  • SKDH Research
  • GitHub
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Section Navigation

  • Scikit Digital Health (skdh)
    • skdh.Pipeline
  • File Reading (skdh.io)
    • skdh.io.ReadCwa
    • skdh.io.ReadBin
    • skdh.io.ReadApdmH5
    • skdh.io.ReadEmpaticaAvro
    • skdh.io.ReadNumpyFile
    • skdh.io.ReadCSV
    • skdh.io.MultiReader
  • Inertial Data Preprocessing (skdh.preprocessing)
    • skdh.preprocessing.FillGaps
    • skdh.preprocessing.GetDayWindowIndices
    • skdh.preprocessing.CalibrateAccelerometer
    • skdh.preprocessing.DETACH
    • skdh.preprocessing.CountWearDetection
    • skdh.preprocessing.CtaWearDetection
    • skdh.preprocessing.AccelThresholdWearDetection
  • Signal Features (skdh.features)
    • skdh.features.Bank
    • skdh.features.Mean
    • skdh.features.MeanCrossRate
    • skdh.features.StdDev
    • skdh.features.Skewness
    • skdh.features.Kurtosis
    • skdh.features.Range
    • skdh.features.IQR
    • skdh.features.RMS
    • skdh.features.Autocorrelation
    • skdh.features.LinearSlope
    • skdh.features.SignalEntropy
    • skdh.features.SampleEntropy
    • skdh.features.PermutationEntropy
    • skdh.features.DominantFrequency
    • skdh.features.DominantFrequencyValue
    • skdh.features.PowerSpectralSum
    • skdh.features.RangePowerSum
    • skdh.features.SpectralFlatness
    • skdh.features.SpectralEntropy
    • skdh.features.ComplexityInvariantDistance
    • skdh.features.RangeCountPercentage
    • skdh.features.RatioBeyondRSigma
    • skdh.features.JerkMetric
    • skdh.features.DimensionlessJerk
    • skdh.features.SPARC
    • skdh.features.DetailPower
    • skdh.features.DetailPowerRatio
  • Context Detection (skdh.context)
    • skdh.context.Ambulation
    • skdh.context.PredictGaitLumbarLgbm
  • IMU Sleep Analysis (skdh.sleep)
    • skdh.sleep.Sleep
    • skdh.sleep.TotalSleepTime
    • skdh.sleep.PercentTimeAsleep
    • skdh.sleep.NumberWakeBouts
    • skdh.sleep.SleepOnsetLatency
    • skdh.sleep.WakeAfterSleepOnset
    • skdh.sleep.AverageSleepDuration
    • skdh.sleep.AverageWakeDuration
    • skdh.sleep.SleepWakeTransitionProbability
    • skdh.sleep.WakeSleepTransitionProbability
    • skdh.sleep.SleepGiniIndex
    • skdh.sleep.WakeGiniIndex
    • skdh.sleep.SleepAverageHazard
    • skdh.sleep.WakeAverageHazard
    • skdh.sleep.SleepPowerLawDistribution
    • skdh.sleep.WakePowerLawDistribution
  • IMU Activity Analysis (skdh.activity)
    • skdh.activity.ActivityLevelClassification
    • skdh.activity.ActivityEndpoint
    • skdh.activity.IntensityGradient
    • skdh.activity.MaxAcceleration
    • skdh.activity.TotalIntensityTime
    • skdh.activity.BoutIntensityTime
    • skdh.activity.FragmentationEndpoints
    • skdh.activity.EqualAverageDurationThreshold
    • skdh.activity.SignalFeatures
    • skdh.activity.metric_en
    • skdh.activity.metric_enmo
    • skdh.activity.metric_bfen
    • skdh.activity.metric_hfen
    • skdh.activity.metric_hfenplus
    • skdh.activity.metric_mad
  • IMU Gait Analysis (skdh.gait)
    • skdh.gait.GaitLumbar
    • skdh.gait.StrideTime
    • skdh.gait.StanceTime
    • skdh.gait.SwingTime
    • skdh.gait.StepTime
    • skdh.gait.InitialDoubleSupport
    • skdh.gait.TerminalDoubleSupport
    • skdh.gait.DoubleSupport
    • skdh.gait.SingleSupport
    • skdh.gait.StepLengthModel1
    • skdh.gait.StepLengthModel2
    • skdh.gait.StrideLengthModel1
    • skdh.gait.StrideLengthModel2
    • skdh.gait.GaitSpeedModel1
    • skdh.gait.GaitSpeedModel2
    • skdh.gait.Cadence
    • skdh.gait.IntraStepCovarianceV
    • skdh.gait.IntraStrideCovarianceV
    • skdh.gait.HarmonicRatioV
    • skdh.gait.PhaseCoordinationIndex
    • skdh.gait.GaitSymmetryIndex
    • skdh.gait.StepRegularityV
    • skdh.gait.StrideRegularityV
    • skdh.gait.AutocovarianceSymmetryV
    • skdh.gait.RegularityIndexV
    • skdh.gait.substeps.PreprocessGaitBout
    • skdh.gait.substeps.VerticalCwtGaitEvents
    • skdh.gait.substeps.ApCwtGaitEvents
    • skdh.gait.substeps.CreateStridesAndQc
    • skdh.gait.substeps.TurnDetection
  • IMU Gait Analysis [Old] (skdh.gait_old)
    • skdh.gait_old.Gait
    • skdh.gait_old.StrideTime
    • skdh.gait_old.StanceTime
    • skdh.gait_old.SwingTime
    • skdh.gait_old.StepTime
    • skdh.gait_old.InitialDoubleSupport
    • skdh.gait_old.TerminalDoubleSupport
    • skdh.gait_old.DoubleSupport
    • skdh.gait_old.SingleSupport
    • skdh.gait_old.StepLength
    • skdh.gait_old.StrideLength
    • skdh.gait_old.GaitSpeed
    • skdh.gait_old.Cadence
    • skdh.gait_old.IntraStepCovarianceV
    • skdh.gait_old.IntraStrideCovarianceV
    • skdh.gait_old.HarmonicRatioV
    • skdh.gait_old.PhaseCoordinationIndex
    • skdh.gait_old.GaitSymmetryIndex
    • skdh.gait_old.StepRegularityV
    • skdh.gait_old.StrideRegularityV
    • skdh.gait_old.AutocovarianceSymmetryV
    • skdh.gait_old.RegularityIndexV
  • IMU Sit-to-Stand Analysis (skdh.sit2stand)
    • skdh.sit2stand.Sit2Stand
  • Utility Functions (skdh.utility)
    • skdh.utility.math.moving_mean
    • skdh.utility.math.moving_sd
    • skdh.utility.math.moving_skewness
    • skdh.utility.math.moving_kurtosis
    • skdh.utility.math.moving_median
    • skdh.utility.orientation.correct_accelerometer_orientation
    • skdh.utility.windowing.compute_window_samples
    • skdh.utility.windowing.get_windowed_view
  • SKDH API

SKDH API#

  • Scikit Digital Health (skdh)
    • Pipeline Processing
  • File Reading (skdh.io)
    • Device Specific IO
    • General Data IO
    • Multiple File IO
  • Inertial Data Preprocessing (skdh.preprocessing)
    • Gap Filling
    • Day Windowing
    • Sensor Calibration
    • Wear Detection
  • Signal Features (skdh.features)
    • Combined Feature Processing
    • Signal Features
  • Context Detection (skdh.context)
    • Context Detection
  • IMU Sleep Analysis (skdh.sleep)
    • Pipeline sleep processing
    • Sleep Endpoints
    • Background Information
    • Adding Custom Sleep Metrics
  • IMU Activity Analysis (skdh.activity)
    • Pipeline Activity Processing
    • Activity Endpoints
    • Accelerometer Metrics
    • Background Information
    • Adding Custom Endpoints
    • Using Custom Cutpoints/Metrics
    • References
  • IMU Gait Analysis (skdh.gait)
    • Pipeline Gait Processing
    • Gait Bout Processing
    • Event Level Gait Metrics
    • Bout Level Gait Metrics
    • Matching skdh.gait_old.Gait
    • Background Information
    • Updating Code to the New Gait Module
    • Adding Custom Gait Endpoints
  • IMU Gait Analysis [Old] (skdh.gait_old)
    • Pipeline gait processing
    • Event Level Gait Endpoints
    • Bout Level Gait Endpoints
    • Background Information
    • Adding Custom Gait Endpoints
  • IMU Sit-to-Stand Analysis (skdh.sit2stand)
    • Pipeline sit-to-stand processing
  • Utility Functions (skdh.utility)
    • Binary State Fragmentation Endpoints
    • Misc. Math Functions
    • Orientation Functions
    • Windowing Functions

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Scikit Digital Health (skdh)

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